The COVID-19 Natural Origins Theory Lacks a Storyline
Surely someone can explain how this might have occurred?
"How often have I said to you that when you have eliminated the impossible, whatever remains, however improbable, must be the truth? We know that he did not come through the door, the window, or the chimney. We also know that he could not have been concealed in the room, as there is no concealment possible. When, then, did he come?" Sherlock Holmes in The Sign of Four, Arthur Conan Doyle, 1890
A storyline is “the qualitative and descriptive component of a scenario.” Storylines are commonly-used elements for thinking logically and systematically about plausible futures and plausible pasts. In the past week we all became familiar with the use of storylines in the search for the Titan submersible. As evidence accumulated an explanation for what happened evolved from multiple storylines that included the possibility of being stranded on the ocean floor, to bobbing lost on the ocean surface to a catastrophic implosion. Tragically, only the latter survived the accumulation of evidence.
Discussions of the origins of COVID-19 have been strong on theoretical and evidentiary claims (or lack thereof), but less so on storylines consistent with both theory and evidence. This holds especially for arguments for a market origin, and less so for a research-related origin. Both theories are judged plausible by U.S. intelligence and other agencies.
In 2021, Holmes and colleagues proposed a market origin storyline consistent with the evidence available at the time. You can see their summary of the storyline illustrated in their figure below.
This storyline posited that SARS-CoV-2 developed in animals that were caught and shipped to multiple wildlife markets in Wuhan, including the Huanan Seafood and Wildlife Market. They explain, “The multi-market aspect of the early outbreak can be explained by distribution of SARS-CoV-2 infected animals to more than one market.” This storyline is similar to what happened with SARS1.
However, subsequent analyses have overturned the idea that Covid-19 emerged in multiple markets across Wuhan. Instead, the current leading theory for a market origin centers on the Huanan Market.
One complexity of market-origin scenarios is that evidence points to two distinct lineages of SARS-CoV-2. Pekar and colleagues call this a “paradox” and develop a storyline to accommodate it (emphasis added in the below):
The genomic diversity of SARS-CoV-2 during the early pandemic presents a paradox. Lineage A viruses are at least two mutations closer to bat coronaviruses, indicating that the ancestor of SARS-CoV-2 arose from this lineage. However, lineage B viruses predominated early in the pandemic, particularly at the Huanan market, indicating that this lineage began spreading earlier in humans. Further complicating this matter is the molecular clock of SARS-CoV-2 in humans, which rejects a single-introduction origin of the pandemic from a lineage A virus. We resolved this paradox by showing that early SARS-CoV-2 genomic diversity and epidemiology are best explained by at least two separate zoonotic transmissions, in which lineage A and B progenitor viruses were both circulating in nonhuman mammals before their introduction into humans.
You can see their storyline illustrated in their schematic below.
Pekar and colleagues conclude that the B lineage of SARS-CoV-2 was introduced to humans on about 18 November 2019 and the A lineage on about 25 November 2019, in two independent events, both at the Haunan Market in Wuhan.
The dual spillover events obviously creates some complications for crafting a storyline consistent with the evidence. Here is what this theory would appear to imply in practical terms:
Multiple animals were infected with transmissible lineages of SARs-CoV-2;
The closest reservoirs of related bat corona viruses have been identified far from Wuhan, so an explanation is needed for how multiple animals are infected and how they find their way to a Wuhan market far from related coronavirus reservoirs and during a time of year when bats are inactive;
The infected animals necessarily were necessarily caught, caged, transported to the Huanan Market without infecting anyone else, or other animals, along the way (alternatively, they infected others, but all of these infections resulted in a dead end for further transmission);
The animals happened to both be brought to the Huanan Market, about one week apart, where they each independently initiated a transmission event that spread rapidly.
I may have missed something, so I welcome your thoughts.
Here is what I have yet to see: A storyline that can explain the four points above in practice.
One group of proponents of the double-spillover at the Huanan Market admit that there is no such storyline, yet still come to a firm conclusion on origin:
[T]here is insufficient evidence to define upstream events, and exact circumstances remain obscure, our analyses indicate that the emergence of SARS-CoV-2 occurred through the live wildlife trade in China and show that the Huanan market was the epicenter of the COVID-19 pandemic.
So here is my challenge to those proposing a Huanan Market origin for COVID-19 based on a double spillover: Create a storyline that can plausibly explain what happened, addressing the four points above. There may be multiple plausible storylines, such as when the Titan submersible first disappeared. Let’s hear them all.
Without such a storyline, a Huanan Market origin cannot stand on even terms with a scenario of a research-related accident, which is supported by multiple, plausible storylines. I’m happy to publish proposed storylines here, especially from those actively promoting the market-origin hypothesis.
Put your thinking caps on. Honest brokering is a group effort!
Please share this on your favorite social media, and especially the invitation to articulate a natural-origin storyline consistent with available evidence and theory. Your comments are welcomed, as usual. Please hit the little heart above and ReStack. Thanks for your support!
The drawing looked like a Pangolin, and I didn’t check it. I should have put intermediate host. Surprised that no one else noticed. Good catch!
I sent your note to my son, who is a serious molecular biologist (Stanford Ph. D. With 30 years of research including founding a major bio-tech company) and he basically flipped out. Let me summarize what he said, after I calmed him down.
Viral evolution and transmission between species is both incredibly complex and very common. Viruses are always trying to infect new species. Such infections fail 99.999% of the time because the new host immune system usually can kill the new virus before the new virus can evolve enough to survive in the new environment. Even if the virus survives, it must both evolve even more to successfully infect other hosts of the same new species and be lucky enough to find another infectable member of the new species before it kills its host. Because the process is both complex and only observed as a really rare success, it’s truly random. As a result we hardly ever have a simple “story line” and really weird things happen. Bat viruses probably infect thousands of pangolins every year. Out of those hundreds of thousands of events, over many years, two cases successfully “took” and randomly showed up within a week of each other in Wuhan. That’s the story.